Cell clustering using pixel clusters (frequencies): Gaussian blur sigma=2, pixel clusters hClusters using z-score cap=3 and iter thresh=2, normalize by size, k=20
Candace Liu
July 22, 2020
1 Heatmaps of pixel clusters x markers
2 Compare pixel clusering with cell clustering
3 Cell-based FlowSOM clustering using pixel clusters
3.1 Cell cluster x frequency of pixel clusters
3.2 Cell cluster x marker
4 New pixel clusters using information from cell clusters